•  
  •  
 

Bulletin of Chinese Academy of Sciences (Chinese Version)

Keywords

crop; soil-borne fungal disease; gene silencing

Document Type

Article

Abstract

Crop disease caused by soil-borne fungal pathogens is one of the major threatens to agriculture nowadays. Due to the lack of efficient control method, it is becoming a key factor to restrict sustainable development of agricultural production in China. Gene silencing (or RNA silencing, RNAi) is an important pathway in eukaryotes that regulates gene expression based on sequence homology. Gene silencingbased technology has been widely used as a new strategy for plant protection. In this review, we summarized occurrence and general prevention method of crop disease caused by soil-borne fungi, and introduced recent advances and applications of RNA silencing in crop protection. By deeply discussing potential values and problems of gene silencing technology for controlling soil-borne fungal pathogens, we point out the advantages and great importance in exploiting gene silencing-based technology for sustainable control of soil-borne fungal pathogens.

First page

822

Last Page

829

Language

Chinese

Publisher

Bulletin of Chinese Academy of Sciences

References

Bockus W W, Shroyer J P. The impact of reduced tillage on soilborne plant pathogens. Annu Rev Phytopathol, 1998, 36:485-500.

Li H, Huang J, Yuan H. Advances in control of plant soil-borne diseases by organic amendments. Acta Phytopathologica Sinica, 2002, 32(4):289-295.

Correll J C. The relationship between formae speciales, races, and vegetative compatibility groups in Fusarium oxysporum. Phytopathol Z, 1991, 81(9):1061-1064.

Bhat R G, Subbarao K V. Host Range Specificity in Verticillium dahliae. Phytopathology, 1999, 89(12):1218-1225.

朱荷琴, 冯自力, 尹志新, 等.我国棉花黄萎病菌致病力分化及ISSR指纹分析.植物病理学报, 2012, 42(3):225-235.

Boland G J, Hall R. Index of plant hosts of Sclerotinia sclerotiorum. Canadian Journal of Plant Pathology, 1994, 16(2):93-108.

Bolton M D, Thomma B P, Nelson B D. Sclerotinia sclerotiorum (Lib.) de Bary:biology and molecular traits of a cosmopolitan pathogen. Molecular Plant Pathology, 2006, 7(1):1-16.

牛伯庆, 汪文静, 谢响明.菌核病防治研究进展.生命科学研究, 2011, (06):537-541.

Bateman G L, Ward E, Antoniw J F. Identification of Gaeumannomyces graminis var. tritici and G. graminis var. avenae using a DNA probe and non-molecular methods. Mycological Research, 1992, 96(9):737-742.

Walker J. Take-all disease of Gramineae:a review of recent work. Review of Plant Pathology, 1975, 54(3):113-144.

Wong P. Cross-protection against the wheat and oat take-all fungi by Gaenmannomyces graminis var. Soil Biology & Biochemistry, 1975, 7(3):189-194.

Meister G, Tuschl T. Mechanisms of gene silencing by doublestranded RNA. Nature, 2004, 431(7006):343-349.

Plasterk R H. RNA silencing:the genome's immune system. Science, 2002, 296(5571):1263-1265.

Baulcombe D. RNA silencing in plants. Nature, 2004, 431(7006):356-363.

Baulcombe D. RNA silencing. Trends Biochem Sci, 2005, 30(6):290-293.

Matzke M A, Primig M, Trnovsky J, et al. Reversible methylation and inactivation of marker genes in sequentially transformed tobacco plants. EMBO J, 1989, 8(3):643-649.

Napoli C, Lemieux C, Jorgensen R. Introduction of a chimeric chalcone synthase gene into petunia results in reversible cosuppression of homologous genes in trans. Plant Cell, 1990, 2(4):279-289.

Waterhouse P M, Graham M W, Wang M B. Virus resistance and gene silencing in plants can be induced by simultaneous expression of sense and antisense RNA. Proc Natl Acad Sci USA, 1998, 95(23):13959-13964.

Fire A, Xu S, Montgomery M K, et al. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature, 1998, 391(6669):806-811.

Hamilton A J, Baulcombe D C. A species of small antisense RNA in posttranscriptional gene silencing in plants. Science, 1999, 286(5441):950-952.

Romano N, Macino G. Quelling:transient inactivation of gene expression in Neurospora crassa by transformation with homologous sequences. Mol Microbiol, 1992, 6(22):3343-3353.

Chang S S, Zhang Z, Liu Y. RNA interference pathways in fungi:mechanisms and functions. Annu Rev Microbiol, 2012, 66:305-323.

Shiu P K, Raju N B, Zickler D, et al. Meiotic silencing by unpaired DNA. Cell, 2001, 107(7):905-916.

Lee H C, Chang S S, Choudhary S, et al. qiRNA is a new type of small interfering RNA induced by DNA damage. Nature, 2009, 459(7244):274-277.

Lee H C, Li L, Gu W, et al. Diverse pathways generate microRNAlike RNAs and Dicer-independent small interfering RNAs in fungi. Mol Cell, 2010, 38(6):803-814.

Calo S, Nicolas F E, Vila A, et al. Two distinct RNA-dependent RNA polymerases are required for initiation and amplification of RNA silencing in the basal fungus Mucor circinelloides. Mol Microbiol, 2012, 83(2):379-394.

Campo S, Gilbert K B, Carrington J C. Small RNA-based antiviral defense in the phytopathogenic fungus Colletotrichum higginsianum. PLoS Pathog, 2016, 12(6):e1005640.

Cervantes M, Vila A, Nicolas F E, et al. A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides. PLoS One, 2013, 8(7):e69283.

Nicolas F E, De Haro J P, Torres-Martinez S, et al. Mutants defective in a Mucor circinelloides dicer-like gene are not compromised in siRNA silencing but display developmental defects. Fungal Genet Biol, 2007, 44(6):504-516.

Nicolas F E, Moxon S, De Haro J P, et al. Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Res, 2010, 38(16):5535-5541.

Torres-Martinez S, Ruiz-Vazquez R M. RNAi pathways in Mucor:A tale of proteins, small RNAs and functional diversity. Fungal Genet Biol, 2016, 90:44-52.

Nolan T, Cecere G, Mancone C, et al. The RNA-dependent RNA polymerase essential for post-transcriptional gene silencing in Neurospora crassa interacts with replication protein A. Nucleic Acids Res, 2008, 36(2):532-538.

Ebert A, Lein S, Schotta G, et al. Histone modification and the control of heterochromatic gene silencing in Drosophila. Chromosome Res, 2006, 14(4):377-392.

Segers G C, Zhang X, Deng F, et al. Evidence that RNA silencing functions as an antiviral defense mechanism in fungi. Proc Natl Acad Sci U S A, 2007, 104(31):12902-12906.

Sun Q, Choi G H, Nuss D L. A single Argonaute gene is required for induction of RNA silencing antiviral defense and promotes viral RNA recombination. Proc Natl Acad Sci USA, 2009, 106(42):17927-17932.

Zhang X, Segers G C, Sun Q, et al. Characterization of hypovirusderived small RNAs generated in the chestnut blight fungus by an inducible DCL-2-dependent pathway. J Virol, 2008, 82(6):2613-2619.

Sanford J, Johnston S. The concept of parasite-derived resistance-Deriving resistance genes from the parasite's own genome. Journal of Theoretical Biology, 1985, 113(2):395-405.

Duan C G, Wang C H, Fang R X, et al. Artificial MicroRNAs highly accessible to targets confer efficient virus resistance in plants. J Virol, 2008, 82(22):11084-11095.

Duan C G, Wang C H, Guo H S. Application of RNA silencing to plant disease resistance. Silence, 2012, 3(1):5.

Qu J, Ye J, Fang R. Artificial microRNA-mediated virus resistance in plants. J Virol, 2007, 81(12):6690-6699.

Schwab R, Ossowski S, Riester M, et al. Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell, 2006, 18(5):1121-1133.

Baum J A, Bogaert T, Clinton W, et al. Control of coleopteran insect pests through RNA interference. Nat Biotechnol, 2007, 25(11):1322-1326.

Huang G, Allen R, Davis E L, et al. Engineering broad root-knot resistance in transgenic plants by RNAi silencing of a conserved and essential root-knot nematode parasitism gene. Proc Natl Acad Sci USA, 2006, 103(39):14302-14306.

Nowara D, Gay A, Lacomme C, et al. HIGS:host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis. Plant Cell, 2010, 22(9):3130-3141.

Panwar V, Mccallum B, Bakkeren G. Host-induced gene silencing of wheat leaf rust fungus Puccinia triticina pathogenicity genes mediated by the Barley stripe mosaic virus. Plant Mol Biol, 2013, 81(6):595-608.

Wang M, Weiberg A, Lin F-M, et al. Bidirectional cross-kingdom RNAi and fungal uptake of external RNAs confer plant protection. Nature Plants, 2016, 2(10):16151.

Ghag S B, Shekhawat U K, Ganapathi T R. Host-induced posttranscriptional hairpin RNA-mediated gene silencing of vital fungal genes confers efficient resistance against Fusarium wilt in banana. Plant Biotechnol J, 2014, 12(5):541-553.

Hu Z, Parekh U, Maruta N, et al. Down-regulation of Fusarium oxysporum endogenous genes by Host-Delivered RNA interference enhances disease resistance. Front Chem, 2015, 3:1.

Zhang T, Jin Y, Zhao J H, et al. Host-induced gene silencing of the target gene in fungal cells confers effective resistance to the cotton wilt disease pathogen Verticillium dahliae. Mol Plant, 2016, 9(6):939-942.

Zhang T, Zhao Y L, Zhao J H, et al. Cotton plants export microRNAs to inhibit virulence gene expression in a fungal pathogen. Nat Plants, 2016, 2(10):16153.

Nicolás F E, Torresmartínez S, Ruizvázquez R M. Loss and retention of RNA interference in fungi and parasites. Plos Pathogens, 2013, 9(1):430-445.

Chaloner T, Van Kan J A, Grant-Downton R T. RNA 'Information Warfare' in pathogenic and mutualistic interactions. Trends Plant Sci, 2016, 21(9):738-748.

Kim G, Leblanc M L, Wafula E K, et al. Plant science. Genomicscale exchange of mRNA between a parasitic plant and its hosts. Science, 2014, 345(6198):808-811.

Koch A, Biedenkopf D, Furch A, et al. An RNAi-based control of Fusarium graminearum infections through spraying of long dsRNAs involves a plant passage and is controlled by the fungal silencing machinery. PLoS Pathog, 2016, 12(10):e1005901.

Soanes D, Richards T A. Horizontal gene transfer in eukaryotic plant pathogens. Annu Rev Phytopathol, 2014, 52:583-614.

Share

COinS